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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_986363_986616_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
986363 - 986616
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TGTCCCTCAGCT
Flanking Amino Acid:
ENVHSPYESTTKCKICEWAF
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.7
40.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
35.3
-1.7
2.9
41.5
39
Minor BPS
59.1
0.36
1.8
79.32
42

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493