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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_986718_987609_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
986718 - 987609
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TCCTCGCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
ACTGCGTTACCT
Flanking Amino Acid:
KPGEMPYVCQVCQYRSSLYS
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
75.7
0.58
0.8
68.4
32
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
47.8
-0
2.4
69.5
47.5

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493