About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_987757_988651_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
987757 - 988651
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCT
5'SS Class:
major
3'SS Sequence:
GCATTTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGTATTTAATT
Flanking Amino Acid:
AFQQHFMRHQKKSVYHCNKC
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.1
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.9
0.42
0.9
66.1
40.6
Minor 5ss
38.4
-1.3
3.5
57.3
46.9
Minor BPS
67.5
0.63
1.4
79.03
37.5

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493