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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_991236_992016_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
991236 - 992016
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTTTTATAACA
Flanking Amino Acid:
SHEFSNIIFRGPSWISHSRH
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.4
0.64
1
74.5
38.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
65.6
0.49
1.6
76.59
34

Associated Gene:

Gene:
POGZ
Ensembl Gene ID:
ENSAPLG00000009926
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010358
971242 - 993734
22493