Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_999000_999130_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

999000 - 999130

Intron Length:

131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTGCG

5'SS Class:

major

3'SS Sequence:

CCGGGGCCCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

GTGCCGCTGACG

Flanking Amino Acid:

AAGTQPLSRTTTPMVTGTSV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.3

65.8

40.2

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

55.1

0.12

45.9

36.6

Minor 5ss

28.9

-2.4

31.8

35.2

Minor BPS

42.4

-0.7

2.3

49.79

43.9

Associated Gene:

Gene:

PSMB4

Ensembl Gene ID:

ENSAPLG00000009850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010252

997063 - 999243

2181