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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1047451_1048797_F

Intron Information:

Intron Rank:
132670
Intron Class:
major
Intron Phase:
Intron Coordinates:
1047451 - 1048797
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGAG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
64.4
41.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
27
-2.6
3.1
31.3
43
Minor BPS
81.4
1.06
1.1
92.3
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021304
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024520
1045826 - 1051948
6123