About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1050427_1051637_F

Intron Information:

Intron Rank:
132672
Intron Class:
major
Intron Phase:
Intron Coordinates:
1050427 - 1051637
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAC
U12 Branch Point Sequence:
ACATCACCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
75.6
36.7
Major BPS
56.9
0.17
1.1
59.7
36.1
Major PPT
80.1
0.68
0.7
72.7
32.1
Minor 5ss
34.9
-1.7
3.4
45.9
49.3
Minor BPS
38.9
-0.8
2.1
48.13
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021304
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024520
1045826 - 1051948
6123