About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1091294_1091375_F


Intron Information:

Intron Rank:
37

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
1091294 - 1091375

Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATGGGGC

5'SS Class:
major

3'SS Sequence:
GGTTGCCCAGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTAAT

U12 Branch Point Sequence:
CTGATGCTAATG

Flanking Amino Acid:
DKDEPDPGTKGRGEAFVMPG

Intron Amino Acid Position:
1774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.9
0.7
1
64.8
41.3

Major BPS
79.3
0.73
1.1
77.9
34.9

Major PPT
63.1
0.29
1
56.2
40

Minor 5ss
35.7
-1.6
3.5
49.7
46.9

Minor BPS
40
-0.8
2.2
43.6
42.7

Associated Gene:

Gene:
ITPR3

Ensembl Gene ID:

Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1075820 - 1102200
26381

1075820 - 1102200
26381