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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1135960_1138344_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1135960 - 1138344
Intron Length:
2385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTCTCTTCACT
Flanking Amino Acid:
ILNSNKDLGIWLRGTDLSEP
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.2
36.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
75.6
0.58
0.8
74.6
29.1
Minor 5ss
32.2
-2
3.1
37.6
42.2
Minor BPS
64.3
0.53
1.8
80.65
41.4

Associated Gene:

Gene:
LEMD2
Ensembl Gene ID:
ENSAPLG00000028691
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027316
1135767 - 1143948
8182