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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1138425_1139074_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1138425 - 1139074
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATGGATT
Flanking Amino Acid:
WVSEARDHVVNITGSSPQKF
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84
0.77
0.8
80.4
31.6
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
49.7
0.06
1.8
72.15
39.1

Associated Gene:

Gene:
LEMD2
Ensembl Gene ID:
ENSAPLG00000028691
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027316
1135767 - 1143948
8182