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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1139152_1140423_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1139152 - 1140423
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCTTTGACT
Flanking Amino Acid:
ELYNYLSIQAGNFECGNPEN
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.3
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.2
0.68
0.9
74.2
39.7
Minor 5ss
36.5
-1.5
2.8
45.9
42.3
Minor BPS
81.5
1.07
1
90.84
33.1

Associated Gene:

Gene:
LEMD2
Ensembl Gene ID:
ENSAPLG00000028691
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027316
1135767 - 1143948
8182