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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1167134_1168261_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1167134 - 1168261
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCGCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGGTCCTAACCT
Flanking Amino Acid:
CAAPPLFGWSRYMPEGMQCS
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74
38.4
Major BPS
72
0.55
1
71.8
31.4
Major PPT
72.9
0.52
1
69.1
37
Minor 5ss
28.1
-2.5
2.7
31.4
42.8
Minor BPS
57.2
0.31
2
76.35
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005325
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005513
1164867 - 1169107
4241