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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1193701_1193868_R

Intron Information:

Intron Rank:
155198
Intron Class:
major
Intron Phase:
Intron Coordinates:
1193701 - 1193868
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACGG
5'SS Class:
major
3'SS Sequence:
TCCTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ACTAAATTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
53.4
45.5
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
84.5
0.78
0.7
76.7
32
Minor 5ss
24.5
-2.9
3.1
29.7
43.1
Minor BPS
45
-0.3
2
56.85
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030991
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026417
1189647 - 1199772
10126