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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1194546_1196847_R

Intron Information:

Intron Rank:
155200
Intron Class:
major
Intron Phase:
Intron Coordinates:
1194546 - 1196847
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TGCATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGGTTCTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
75.4
34.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.7
0.58
0.8
73.6
36.9
Minor 5ss
35.4
-1.7
3.5
54.7
43.6
Minor BPS
49
0
1.9
68.84
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030991
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026417
1189647 - 1199772
10126