About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1197676_1199672_R

Intron Information:

Intron Rank:
155202
Intron Class:
major
Intron Phase:
Intron Coordinates:
1197676 - 1199672
Intron Length:
1997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TCGTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GACCTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
67.9
39.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.8
0.72
0.8
80.7
31.3
Minor 5ss
34.8
-1.7
2.9
37.7
40.9
Minor BPS
46.3
-0.2
1.8
59.49
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030991
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026417
1189647 - 1199772
10126