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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1201634_1202830_R

Intron Information:

Intron Rank:
148472
Intron Class:
major
Intron Phase:
Intron Coordinates:
1201634 - 1202830
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCATGTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.4
0.8
0.7
80.7
30.2
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
62.7
0.48
1.8
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027256
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022118
1200139 - 1203127
2989
ENSAPLT00000018586
1201139 - 1203553
2415