Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1203045_1203473_R

Intron Information:

Intron Rank:

148473

Intron Class:

major

Intron Phase:

Intron Coordinates:

1203045 - 1203473

Intron Length:

429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTACC

5'SS Class:

major

3'SS Sequence:

TTTTGGCATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGGCAT

U12 Branch Point Sequence:

AGCTCCAGCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.57

1.2

70.9

39.4

Major BPS

59.9

0.25

1.5

71.4

45.1

Major PPT

76.4

0.59

70.3

40.4

Minor 5ss

-2.1

2.7

38.2

39.5

Minor BPS

45.6

-0.2

2.1

65.26

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027256

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018586

1201139 - 1203553

2415