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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1267853_1273845_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1267853 - 1273845
Intron Length:
5993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
GCGAGCTGAGCT
Flanking Amino Acid:
FFGTSQSAEKMYIQTTTLTI
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
42
-0.5
2
54.33
46.7

Associated Gene:

Gene:
GRM4
Ensembl Gene ID:
ENSAPLG00000005514
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005733
1265561 - 1303820
38260