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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1276260_1280020_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1276260 - 1280020
Intron Length:
3761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
GGTGTGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGCAG
U12 Branch Point Sequence:
GTGGCAGCAGCC
Flanking Amino Acid:
KKGSSIKKCTNRERIGQDSS
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
61.9
42.9
Major BPS
37.4
-0.7
1.7
42.8
49.4
Major PPT
73
0.52
1
65.2
45.5
Minor 5ss
34.8
-1.7
3.2
48.7
41.5
Minor BPS
34.7
-1.1
2.3
44.45
43.3

Associated Gene:

Gene:
GRM4
Ensembl Gene ID:
ENSAPLG00000005514
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005733
1265561 - 1303820
38260