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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1280662_1282578_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1280662 - 1282578
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGAGG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
CTTCTCTCCACA
Flanking Amino Acid:
VIIFANEDDIRRVLEAAKRA
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.6
45.5
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
25.1
-2.9
3.1
30.7
42.8
Minor BPS
48.6
-0.1
2
64.43
42.1

Associated Gene:

Gene:
GRM4
Ensembl Gene ID:
ENSAPLG00000005514
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005733
1265561 - 1303820
38260