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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1282715_1293571_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1282715 - 1293571
Intron Length:
10857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
CTCTGTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
GGGGTCTCAGTG
Flanking Amino Acid:
EAFIQKSREDGGVCVAQSVK
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.3
42.2
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
71.5
0.48
0.9
68.5
37.3
Minor 5ss
33.8
-1.8
2.9
40.4
45.5
Minor BPS
40.4
-0.8
1.7
36.41
39.7

Associated Gene:

Gene:
GRM4
Ensembl Gene ID:
ENSAPLG00000005514
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005733
1265561 - 1303820
38260