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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1293789_1302980_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1293789 - 1302980
Intron Length:
9192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCGTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCTCCTGACT
Flanking Amino Acid:
MVANILRLFKIPQISYASTA
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.7
37.1
Major BPS
79
0.72
1
69
38.9
Major PPT
80
0.68
0.8
72.6
37.6
Minor 5ss
32.7
-2
3.8
49.3
47.2
Minor BPS
64.5
0.54
1.7
85.45
34.1

Associated Gene:

Gene:
GRM4
Ensembl Gene ID:
ENSAPLG00000005514
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005733
1265561 - 1303820
38260