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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1320094_1320869_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1320094 - 1320869
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGTTAT
U12 Branch Point Sequence:
TTGTCGTTATCC
Flanking Amino Acid:
TLGRLVGIFENRDRKHRTYV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
68.8
0.47
1.3
59.6
46.8
Major PPT
82.7
0.74
0.8
73.4
37.1
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
56.5
0.18
2.3
73.97
43.1

Associated Gene:

Gene:
NUDT3
Ensembl Gene ID:
ENSAPLG00000026621
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038730
1318783 - 1340602
21820