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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1320915_1328582_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1320915 - 1328582
Intron Length:
7668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
GAACTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCTCTTTGAACT
Flanking Amino Acid:
VAAVREVCEEAGVKGTLGRL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
74.8
0.62
1
67
39.8
Major PPT
61.2
0.25
0.9
54.3
36
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
63.3
0.5
1.4
77.64
38.9

Associated Gene:

Gene:
NUDT3
Ensembl Gene ID:
ENSAPLG00000026621
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038730
1318783 - 1340602
21820