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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1347079_1347655_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1347079 - 1347655
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCACTTCTAACG
Flanking Amino Acid:
RDTYRRSAVPQRWIRSWTWS
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
46.2
-0.4
1.7
46.65
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008728
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009076
1347002 - 1351482
4481