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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1347395_1347655_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1347395 - 1347655
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTAACT
Flanking Amino Acid:
RDTYRRSAVPPGADKKAEAG
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
86.8
0.83
0.7
84.7
23
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
79.9
1.02
1.5
93.44
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008728
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024980
1347204 - 1351780
4577