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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1347734_1350780_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1347734 - 1350780
Intron Length:
3047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCCTCTCTAAAT
Flanking Amino Acid:
RPETGRPRPKGLEGERPARL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.8
0.65
0.8
72.8
30.9
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
49.8
0.06
1.8
65.15
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008728
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024980
1347204 - 1351780
4577
ENSAPLT00000009076
1347002 - 1351482
4481