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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1364351_1364740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1364351 - 1364740
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
TTGCTCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CCCCCCCGACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.4
37
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
77.4
0.62
0.8
69.6
36.7
Minor 5ss
30
-2.3
3.5
34
41.8
Minor BPS
40.5
-0.7
1.9
44.96
43.1

Associated Gene:

Gene:
PACSIN1
Ensembl Gene ID:
ENSAPLG00000008350
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039799
1364240 - 1367800
3561
ENSAPLT00000008678
1364240 - 1367995
3756