Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1365464_1365549_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1365464 - 1365549

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGCGG

5'SS Class:

major

3'SS Sequence:

CTCCGCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

GGGTGCTCACCC

Flanking Amino Acid:

SKRWRQLIEKGPQYGSLERA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.5

0.3

1.3

46.3

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

67.6

0.4

0.8

57.6

33.3

Minor 5ss

34.6

-1.7

3.5

47.8

47.7

Minor BPS

43.5

-0.5

2.1

52.03

44.9

Associated Gene:

Gene:

PACSIN1

Ensembl Gene ID:

ENSAPLG00000008350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008678

1364240 - 1367995

3756

ENSAPLT00000039799

1364240 - 1367800

3561