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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1372564_1372939_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1372564 - 1372939
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CTGGCCTCACCT
Flanking Amino Acid:
KAAPGDVRYCGGDTSWADSE
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.9
32.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
78.8
0.65
0.8
69.6
36.7
Minor 5ss
37.9
-1.4
2.9
51.5
44.9
Minor BPS
48.9
-0
2
67.53
49

Associated Gene:

Gene:
SPDEF
Ensembl Gene ID:
ENSAPLG00000017680
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023644
1372157 - 1374494
2338