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Intron Name: Anas_platyrhynchos_platyrhynchos_27_1372988_1373074_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1372988 - 1373074

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGTGC

5'SS Class:

major

3'SS Sequence:

TCCTCCTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CGCTCTCTGACT

Flanking Amino Acid:

LHAHLDIWKSAAWMKEKAAP

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

61.2

40.3

Major BPS

69.1

0.47

60.7

37.6

Major PPT

84.3

0.77

0.7

76.2

32.4

Minor 5ss

32.1

-2

3.3

41.6

45.3

Minor BPS

53.1

0.18

1.7

68.25

Associated Gene:

Gene:

SPDEF

Ensembl Gene ID:

ENSAPLG00000017680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023644

1372157 - 1374494

2338