Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1405058_1409339_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1405058 - 1409339

Intron Length:

4282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

ATTCTGTGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TGTATTTACACT

Flanking Amino Acid:

NNLSVVTYSKLNSDLCYLTA

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

77.2

32.8

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

74.9

0.56

69.3

41.1

Minor 5ss

32.6

-2

3.4

44.1

43.8

Minor BPS

46.5

-0.1

2.1

68.35

42.9

Associated Gene:

Gene:

ILRUN

Ensembl Gene ID:

ENSAPLG00000019995

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042887

1399113 - 1417628

18516