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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1409669_1412003_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1409669 - 1412003
Intron Length:
2335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTGTCTTTCATT
Flanking Amino Acid:
MCTATGLYYGDVIWVILSVE
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80.7
0.69
0.8
76
32.4
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
61.1
0.43
1.7
76
41.5

Associated Gene:

Gene:
ILRUN
Ensembl Gene ID:
ENSAPLG00000019995
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042887
1399113 - 1417628
18516
ENSAPLT00000041972
1399113 - 1417628
18516
ENSAPLT00000008392
1409307 - 1419160
9854
ENSAPLT00000044769
1405820 - 1417628
11809