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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1438677_1439340_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1438677 - 1439340
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
TCATTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GTTATATAAACT
Flanking Amino Acid:
YCDTYLTHDSPSVRKTHCSG
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.8
0.72
0.8
80.8
31
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
51
0.11
2
74.44
41.9

Associated Gene:

Gene:
SNRPC
Ensembl Gene ID:
ENSAPLG00000023212
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023475
1438626 - 1443107
4482