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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1459307_1460920_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1459307 - 1460920
Intron Length:
1614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCGGA
5'SS Class:
major
3'SS Sequence:
TTTACTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTCTTCTAACC
Flanking Amino Acid:
RVYCNKASIRIQWTKLKTHP
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
59.4
41.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.5
0.75
0.9
80.9
36.6
Minor 5ss
29.8
-2.3
3.2
29
43.5
Minor BPS
51.8
0.04
1.6
62.27
37.1

Associated Gene:

Gene:
UHRF1BP1
Ensembl Gene ID:
ENSAPLG00000007589
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007928
1445659 - 1476381
30723