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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1470780_1470999_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1470780 - 1470999
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCCTTTATT
Flanking Amino Acid:
MQKMLSLPPAKDSLPKAEEG
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.8
78
35.5
Minor 5ss
28.3
-2.5
3.1
31.3
36.7
Minor BPS
70.7
0.73
1.7
87.87
37.8

Associated Gene:

Gene:
UHRF1BP1
Ensembl Gene ID:
ENSAPLG00000007589
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043634
1460921 - 1476381
15461
ENSAPLT00000007928
1445659 - 1476381
30723