Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_147822_148915_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147822 - 148915

Intron Length:

1094

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTATC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTTGCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTAAAT

U12 Branch Point Sequence:

CATGCTGCATCC

Flanking Amino Acid:

MIKGIQSSGKVMYFSSLFPY

Intron Amino Acid Position:

252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.3

32.8

Major BPS

58.4

0.21

1.2

38.7

Major PPT

72.8

0.51

0.9

64.5

36.5

Minor 5ss

33.5

-1.9

3.1

44.4

43.7

Minor BPS

38.1

-0.9

2.2

46.86

42.8

Associated Gene:

Gene:

SLC6A17

Ensembl Gene ID:

ENSAPLG00000015200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043647

142792 - 153819

11028

ENSAPLT00000015862

142792 - 153819

11028