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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1508392_1515677_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1508392 - 1515677
Intron Length:
7286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGTGTAGC
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCTAA
U12 Branch Point Sequence:
GTATGCCTAAGT
Flanking Amino Acid:
VALGMMLSSLCIWRGPNVNC
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
66.7
38.7
Major BPS
47.8
-0.1
1.3
44.4
40.4
Major PPT
85.9
0.81
0.8
80.6
31.5
Minor 5ss
36.9
-1.5
2.6
42.1
39.8
Minor BPS
47.3
-0.1
2.3
70.43
45.8

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036280
1508140 - 1596566
88427