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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1515759_1516528_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1515759 - 1516528
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATCTTATGGACT
Flanking Amino Acid:
PLHHAALNGHKDVVEVLLRN
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
88.8
0.87
0.6
84
24
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
49.7
0.06
1.8
70.86
39.9

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030894
1498003 - 1596566
98564
ENSAPLT00000028645
1498003 - 1594338
96336
ENSAPLT00000027925
1498003 - 1594338
96336
ENSAPLT00000007263
1498003 - 1596566
98564
ENSAPLT00000036280
1508140 - 1596566
88427