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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1518551_1526805_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1518551 - 1526805
Intron Length:
8255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CCCGTTGTGACG
Flanking Amino Acid:
GPFDPYINAKNNDNETALHC
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
70.7
0.47
0.7
61.5
29
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
39.5
-0.9
2
36
41

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036280
1508140 - 1596566
88427
ENSAPLT00000028645
1498003 - 1594338
96336
ENSAPLT00000027925
1498003 - 1594338
96336
ENSAPLT00000007263
1498003 - 1596566
98564