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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1527820_1528116_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1527820 - 1528116
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTACTACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGCTCTTTACCT
Flanking Amino Acid:
TDVVQILLAAGIDVNIKDNR
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
64.4
0.32
0.8
57.9
31.6
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
67.2
0.62
1.6
80.14
42.2

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027925
1498003 - 1594338
96336
ENSAPLT00000007263
1498003 - 1596566
98564
ENSAPLT00000036280
1508140 - 1596566
88427
ENSAPLT00000030894
1498003 - 1596566
98564
ENSAPLT00000028645
1498003 - 1594338
96336