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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1529894_1531623_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1529894 - 1531623
Intron Length:
1730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTACGTAGC
5'SS Class:
major
3'SS Sequence:
TTCTAAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAACT
Flanking Amino Acid:
AGLKAAGVRPRERPPPPAKP
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.2
60.6
44.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.5
0.55
0.9
67.5
37.7
Minor 5ss
37.9
-1.4
3
55
42.4
Minor BPS
72
0.77
1.6
86.99
39.2

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027925
1498003 - 1594338
96336
ENSAPLT00000007263
1498003 - 1596566
98564
ENSAPLT00000036280
1508140 - 1596566
88427
ENSAPLT00000030894
1498003 - 1596566
98564
ENSAPLT00000028645
1498003 - 1594338
96336