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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1542271_1559562_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1542271 - 1559562
Intron Length:
17292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTTGTTTTATTT
Flanking Amino Acid:
SPSFASEWDEIEKIMSSIGE
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.9
0.83
0.8
81.4
35.2
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
52.9
0.17
1.7
70.13
42.3

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030894
1498003 - 1596566
98564
ENSAPLT00000028645
1498003 - 1594338
96336
ENSAPLT00000027925
1498003 - 1594338
96336
ENSAPLT00000007263
1498003 - 1596566
98564
ENSAPLT00000036280
1508140 - 1596566
88427