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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_15637_15744_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15637 - 15744
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTGAC
U12 Branch Point Sequence:
TTGGGAGTGACG
Flanking Amino Acid:
SGKSTIVKQMKIIHEDGYSE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
48.3
-0.1
1.3
40.8
41.4
Major PPT
82.5
0.73
0.9
73.5
41.8
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
37.4
-1.1
2.5
46.95
46.4

Associated Gene:

Gene:
GNAI3
Ensembl Gene ID:
ENSAPLG00000023137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025578
1975 - 29054
27080