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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1571717_1585363_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1571717 - 1585363
Intron Length:
13647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CTGTCCCCACAG
Flanking Amino Acid:
LNGFDDVRFLGCNVMEDQDL
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
50
0
1.2
61.8
35.9
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
40.1
-0.8
2.1
45.45
46.4

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028645
1498003 - 1594338
96336
ENSAPLT00000027925
1498003 - 1594338
96336
ENSAPLT00000007263
1498003 - 1596566
98564
ENSAPLT00000036280
1508140 - 1596566
88427
ENSAPLT00000030894
1498003 - 1596566
98564