Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1586691_1589128_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1586691 - 1589128

Intron Length:

2438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTCAC

5'SS Class:

major

3'SS Sequence:

CTGCCCGTTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CTGACGGGGACG

Flanking Amino Acid:

AKPPRFSQLRCQDLVSQTSS

Intron Amino Acid Position:

848

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

62.1

38.7

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

72.9

0.51

0.9

68.8

37.1

Minor 5ss

30.3

-2.2

2.8

32.1

35.9

Minor BPS

34.5

-1.3

2.5

39.36

44.5

Associated Gene:

Gene:

ANKS1A

Ensembl Gene ID:

ENSAPLG00000006934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027925

1498003 - 1594338

96336

ENSAPLT00000007263

1498003 - 1596566

98564

ENSAPLT00000036280

1508140 - 1596566

88427

ENSAPLT00000030894

1498003 - 1596566

98564

ENSAPLT00000028645

1498003 - 1594338

96336