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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1590193_1590619_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1590193 - 1590619
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
CTTGTTTCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTGTTTCCAAAG
Flanking Amino Acid:
STQDACAKMRKSTEHMKKIP
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.7
46.2
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
69.6
0.44
1
70.5
34
Minor 5ss
28.2
-2.5
3.4
29.1
43.5
Minor BPS
44.5
-0.5
1.9
53
41.9

Associated Gene:

Gene:
ANKS1A
Ensembl Gene ID:
ENSAPLG00000006934
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007263
1498003 - 1596566
98564
ENSAPLT00000036280
1508140 - 1596566
88427
ENSAPLT00000030894
1498003 - 1596566
98564
ENSAPLT00000028645
1498003 - 1594338
96336
ENSAPLT00000027925
1498003 - 1594338
96336