Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1593555_1596562_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1593555 - 1596562

Intron Length:

3008

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTATGAGAC

5'SS Class:

major

3'SS Sequence:

TGCCTCTGAAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

ATTCCATTATCT

Flanking Amino Acid:

KQDSKRTLSTN*

Intron Amino Acid Position:

1166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

64.9

33.1

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

54.1

0.09

1.1

Minor 5ss

38.5

-1.3

3.4

49.9

41.1

Minor BPS

60.3

0.4

1.9

81.65

39.2

Associated Gene:

Gene:

ANKS1A

Ensembl Gene ID:

ENSAPLG00000006934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036280

1508140 - 1596566

88427

ENSAPLT00000030894

1498003 - 1596566

98564

ENSAPLT00000007263

1498003 - 1596566

98564