Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1600299_1601176_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1600299 - 1601176

Intron Length:

878

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TCAGTCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

TCCTCCCTCAGT

Flanking Amino Acid:

RRFRSVIHHNRCSWKGVKIS

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.5

1.03

0.8

20.4

Major BPS

68.9

0.47

59.2

39.1

Major PPT

76.3

0.59

0.9

69.6

36.5

Minor 5ss

26.9

-2.7

4.4

48.2

47.9

Minor BPS

46.7

-0.1

2.3

67.94

48.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017630

1599673 - 1607649

7977