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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1638655_1642559_F

Intron Information:

Intron Rank:
141709
Intron Class:
major
Intron Phase:
Intron Coordinates:
1638655 - 1642559
Intron Length:
3905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TTCTCTTTCTCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
43.8
-0.4
3.6
69.42
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026310
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040871
1634726 - 1642616
7891